CDS
| Accession Number | TCMCG015C34998 |
| gbkey | CDS |
| Protein Id | XP_027068853.1 |
| Location | join(6366914..6367331,6368082..6368310,6368393..6368531,6368833..6368907,6370022..6370175,6370459..6370678,6370755..6370842,6370950..6371093,6372421..6372468,6372588..6372659,6373415..6373521,6373968..6374116,6374393..6374618,6374874..6375099,6375611..6375753,6376115..6376277,6376826..6376964,6377191..6377363,6377447..6377689) |
| Gene | LOC113694188 |
| GeneID | 113694188 |
| Organism | Coffea arabica |
Protein
| Length | 1051aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA506972 |
| db_source | XM_027213052.1 |
| Definition | probable RNA-dependent RNA polymerase 5 isoform X2 [Coffea arabica] |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03036 [VIEW IN KEGG] |
| KEGG_ko |
ko:K11699
[VIEW IN KEGG] |
| EC |
2.7.7.48
[VIEW IN KEGG]
[VIEW IN INGREDIENT] |
| KEGG_Pathway | - |
| GOs | - |
Sequence
| CDS: ATGGACAATCCTTTTCGAACTCCACCTCCACATCCGCCTCCACCTCCACCGCTTCAAGGTCAAGTCCCTCTTCCACCGAAAGTAGAGGAGGTAATAAACAGAATCTGCGCAGAAAAGCACCATGATCCGCCGGATCACTTGGCCCGGAAAAAGCTGGCACGGGTGGGTGAAGAAGCTGCTCTTGATGTTGTGAGGAGAATTTACAATACCCCGAACCCCATCCGATCCTTGAGCGGTTACATTACATATTTGGTCAATCAGTCAGACTGTGGAGGTGCTGGCGCTAGTGGTAGCCAAGTAGCAGAAGTCTCTTGTGCTACCGCTACTGCTGCTCCAGAGGAATCTATTCCTTACTATTTCTCTCCTCTGAAACGCCCTTTGCCCTCATCACCTTCTGCTTCTCCTATATCTCCCCAAAATGGTGAAAGCTCTGGCTATCAGAAGTTGGACCGTCGTGTGGGCTCACCCTCATCATCAAATTTACCAATGCCAAAGGCTAGCAAAGTTACTCGCCAGCTACAGTTTTCTGGTGAACCTGAGCGTAATGAGAAGAAGATAACTCCTGAGGTTTTCAGCTACCAGAGGACTCTCTTAACTAGTAAACTGGAGTACAGAAAGCTATTCTTAATTTACAGTTATATTGGAAGGAGAAAGTTCGAAGATGTTGTCAGTGATGATGATGCAGACCAAATTTTGGAGATGAAAGATCTCCCGATGGGTAATTTTGAATCCCGCATTTGGGATGCTTATGGAAAGCGATACGTTCCAGCTGCTGATAGAAGACAGAGCACCGAGTGGGATACCGGGAAAACGCATCTGTATTATTGTTACGTATACGCAGATGGAAGTTGTTCTTTTAAGGGACCTTGTTTGGATACTACATCAACTCATCTGCAAAGAACATTAGGAGACGACAATATACTAATTGTCAAGTTTGCTGAAGATGGAAGGAGTTGTATTGACAGGATTTTAAAGGAAGGAATCCTTGTTGGTTTGAGATGTTACCAATTTTTTGTTATTAAAGATGAAAGCAAAGGTACCAAGAAACAAAAGGAGATGGAGAAGGATAAGACTTCACTTTCTCCTGCTGTTAGATGCTATTTTGTTAATTATGACTCTATTGCTGCTCGTGGTAATAGTGAATCATATAGTTTGTGTCCATCGAACTTAAACAAAGCTAGATGCCATTTTATGCACGTCCACATGGTATCTAGCTTGGCAAAATACATGGCAAGGTTTTCGCTGATATTGTCGAAAACAATTAAACTTCCTGTTGATCTGTCTAGCATTGTTATTGAGAGTATTGAAGATATACCTTGTCGTGATGAAAATGGTGATGAAATCCTTGATGAAGATGGAGAAGTGCTTGTACTCACAGATGGAACTGGTTTCATCTCAGAAGATTTAGCTCTGAAGTGTCCCCAAAATTTTTGCAGTGCAAAATTTTTGAAGGATAACGACTTTGAGGATGTGCTGCATCAAGAAAGAAGAGTGGAAGATTGGAATAGGAAACCGCCTCTACTGATGCAGTGCCGTCTGTTCAGTAGAGGTTTGGCAGTCAAGGGAACACTTCTTGTTAATAGAAAGCTTGACGCAGGAACAATTCAGATCAGATCCTCCATGGTGAAGGTCAAGAGGGATATCAGGTGTCCTGTTGCTCCAACATTTGACTCACTTGAAATTGTAGCAGTAAGCCATAAACCAAGGAGATGTCAGCTATCGAAAAATTTGATTGCTCTTTTGAGCTATGGAGGAGTGCCAAGAAACTTTTTCCTGGATATTTTGAGAACTGTTCTTGAAGAGACGCAAGCATTATTTACAAACTTGCACGCAGCGCTTAAAGTTTCTATCCGAAATGGAGACATGGATGATGGTTGGACTACCGCAAGAATGATATTAGCTGGAGTGCCTCTCAGTGAGCCTCACCTTCAGGATCGTTTAGCTAAACTGGCAAATTTTGAGAGGAAATCACTTAAAGAAGGAAAGCTCCCCATTAGTGAAAGCTTTTACGTGATGGGAACAGCTGATCCAACGGGCCTGTTAAAAGCTAATGAAGTCTGTGTGATCTTGGAGAATGGGCAAATATCAGGAAAGGTACTAGTATACAGAAATCCTGGTCTCCACTTTGGTGACGTACATGTCCTTGAAGCAGTATATGTGAAGGAGTTGGAAGATGTAATTGGCAATGCCAAATTTGGTATATTTTTCTCCACCAAAGGACAGAGATCAGTAGCAAATGAAATTGCCAATGGAGATTTTGATGGAGATATGTATTGGGTTTCCAGAAACCCGCAGCTTTTGAAGTACTTTAGAGCCAGTGAACCATGGACTCGAGTGTATTCATCTCCACCAGCAGAAAACAAGAAGCCCAGTGATTTTTCAGCTGAAGCATTAGAATATGAGCTTTTTCGACTCTCTCTAGAGAAGCGGAAGCAAAGCTTTAACATGGCTGTTGCTGCTCATAGCTGGCTCGCATTCATGGACCGTCTTTTGGTACTTCGGGATGAAAATGCTGGTGACACAGATGGTCTTAGGCAACAGATACTTAAATTGGTTGACATATATTATGATGCATTAGATGCACCCAAAAGCGGAAAGAAGGTAAATGTTCCCAGCGACCTGATAGCAAAAAGTTATCCGCACTATATGGGAAAAGGAAACAGCTACCATTCTACATCCATCCTGGGGGATATCTTCGATCAGACTGAGCAGTTTCAATCTGAAAGGCGCTCTATTGGAGAAATATGGAAACTGCCTTGTTTCAATTCACGCATCCCTGAAGAGTACTTGAGCATGTGGATGGCGAGGTACGATGATTACCGGTATGAGATGCGAGACGCATTGGAACAAAATCCCGCCGACGACGGCCTGAAGAACAAGGCCGCAGACAGAGTGATCAAGAAATACAAGGAGTTGCTGTATGAAGCGGCAGAGTTGCAGGAAAGTAAGAAGAAGATGGAAGAAATCAATAACGAGGCGCTTGCCATCTACCATGTGAGCTATGATCATGCCATCGGTCGGGGATGTATTAGCAAATGCAGTTTTGCTTGGAGAGTGGCGGGTTCTGCTCTCTGCAACCTTCATGCCACAAATACCAGCACCAACGAATATCCAATGCTGGTTGTACCATCAGTCCTCCGGAATGCTTTATTTTAG |
| Protein: MDNPFRTPPPHPPPPPPLQGQVPLPPKVEEVINRICAEKHHDPPDHLARKKLARVGEEAALDVVRRIYNTPNPIRSLSGYITYLVNQSDCGGAGASGSQVAEVSCATATAAPEESIPYYFSPLKRPLPSSPSASPISPQNGESSGYQKLDRRVGSPSSSNLPMPKASKVTRQLQFSGEPERNEKKITPEVFSYQRTLLTSKLEYRKLFLIYSYIGRRKFEDVVSDDDADQILEMKDLPMGNFESRIWDAYGKRYVPAADRRQSTEWDTGKTHLYYCYVYADGSCSFKGPCLDTTSTHLQRTLGDDNILIVKFAEDGRSCIDRILKEGILVGLRCYQFFVIKDESKGTKKQKEMEKDKTSLSPAVRCYFVNYDSIAARGNSESYSLCPSNLNKARCHFMHVHMVSSLAKYMARFSLILSKTIKLPVDLSSIVIESIEDIPCRDENGDEILDEDGEVLVLTDGTGFISEDLALKCPQNFCSAKFLKDNDFEDVLHQERRVEDWNRKPPLLMQCRLFSRGLAVKGTLLVNRKLDAGTIQIRSSMVKVKRDIRCPVAPTFDSLEIVAVSHKPRRCQLSKNLIALLSYGGVPRNFFLDILRTVLEETQALFTNLHAALKVSIRNGDMDDGWTTARMILAGVPLSEPHLQDRLAKLANFERKSLKEGKLPISESFYVMGTADPTGLLKANEVCVILENGQISGKVLVYRNPGLHFGDVHVLEAVYVKELEDVIGNAKFGIFFSTKGQRSVANEIANGDFDGDMYWVSRNPQLLKYFRASEPWTRVYSSPPAENKKPSDFSAEALEYELFRLSLEKRKQSFNMAVAAHSWLAFMDRLLVLRDENAGDTDGLRQQILKLVDIYYDALDAPKSGKKVNVPSDLIAKSYPHYMGKGNSYHSTSILGDIFDQTEQFQSERRSIGEIWKLPCFNSRIPEEYLSMWMARYDDYRYEMRDALEQNPADDGLKNKAADRVIKKYKELLYEAAELQESKKKMEEINNEALAIYHVSYDHAIGRGCISKCSFAWRVAGSALCNLHATNTSTNEYPMLVVPSVLRNALF |